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Bioinformatics resources

Bioinformatics resources

The SIB Swiss Institute of Bioinformatics hosts a list of resources developed within SIB groups to support scientists with their bioinformatics analyses (https://www.expasy.org/).

Of particular interest for pathogen genomic data analyses:

V-pipe
Estimation of viral genomic diversity in clinical and environmental samples, including detection and quantification of genomic pathogen variants in wastewater and estimation of their relative fitness advantages.
Nextclade
Nextclade is a user-friendly web portal and command line tool for clade assignment, mutation calling, and sequence quality checks.

Centre for Pathogen Bioinformatics

The SIB Centre for Pathogen Bioinformatics (pathogenbioinformatics.ch) can support you in managing and analysing your pathogen genomic data in alignment with international standards, offering expertise and services in pathogen bioinformatics, computational molecular epidemiology and related multi-site project and data management.